Publications and Papers

Found 305 results
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Beer WN. Comparison of mechanistic and empirical methods for modeling embryo and alevin development in Chinook salmon. North American Journal of Aquaculture [Internet]. 1999 ;61:126-134. Available from: http://dx.doi.org/10.1577/1548-8454(1999)061<0126:COMAEM>2.0.CO;2
Steel AE, Neuhausser S. A comparison of methods for measuring visual water clarity. Journal of the North American Benthological Society [Internet]. 2001 ;21:326-335. Available from: http://dx.doi.org/10.2307/1468419
Townsend RL, Skalski JR. A Comparison of Statistical Methods of Estimating Treatment-Control Ratios (Transportation Benefit Ratios) Based on Spring Chinook Salmon on the Columbia River, 1986-1988. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 1997 ;IX. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=02341-11
Skalski JR, Ngouenet RF. Comparison of the RPA testing rules provided in the 2000 Federal Columbia River Power System (FCRPS) Biological Opinion with new test criteria designed to improve the statistical power of the biological assessments. Monitoring and Evaluation of Smolt Migration in the Columbia Basin [Internet]. 2002 ;VIII. Available from: http://pisces.bpa.gov/release/documents/documentviewer.aspx?doc=00004134-3
Skalski JR, Townsend RL, Steig TW, Hemstrom S. Comparison of Two Alternative Approaches for Estimating Dam Passage Survival of Salmon Smolts. North American Journal of Fisheries Management [Internet]. 2010 ;30:831-839. Available from: http://dx.doi.org/10.1577/M09-103.1
Zabel RW, Faulkner J, Smith SG, Anderson JJ, VanHolmes C, Beer WN, Iltis S, Krinke J, Fredicks G, Bellerud B, et al. Comprehensive Passage (COMPASS) Model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia [Internet]. 2008 ;609:289-300. Available from: http://dx.doi.org/10.1007/s10750-008-9407-z
Gosselin JL. Conservation planning for freshwater-marine carryover effects on Chinook salmon survival Zabel RW, Anderson JJ, Faulkner JR, Baptista AM, Sandford BP. Ecology and Evolution. 2018 ;3:319-332.
Springman KR, Kurath G, Anderson JJ, Emlen JM. Contaminants as viral cofactors: assessing indirect population effects. Aquatic Toxicology [Internet]. 2005 ;71:13-23. Available from: http://dx.doi.org/10.1016/j.aquatox.2004.10.006
Townsend RL, Skalski JR, Dillingham P, Steig TW. Correcting Bias in Survival Estimation Resulting From Tag Failure in Acoustic and Radiotelemetry Studies. Journal of Agricultural, Biological, and Environmental Statistics [Internet]. 2006 ;11:183-196. Available from: http://dx.doi.org/10.1198/108571106X111323
Buchanan RA, Conquest LL, Courbois J-P. A cost analysis of ranked set sampling to estimate a population mean. Environmetrics. 2005 ;16.
Gosselin JL. Cumulative Experiences and Heterogeneity Affect Fish Survival:Examples from a model species (Poecilia reticulata) and salmonid species (Oncorhynchus spp.). School of Aquatic and Fishery Sciences [Internet]. 2011 ;Doctor of Philosophy:211. Available from: sites/default/files/papers/GosselinDissertation.pdf
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Anderson JJ, Knudsen EE. Decadal climate cycles and declining Columbia River salmon. In: Sustainable Fisheries Management: Pacific Salmon. Sustainable Fisheries Management: Pacific Salmon. New York: CRC Press LLC; 2000. pp. 467-484. Available from: sites/default/files/papers/anderson/victoria.pdf
Anderson JJ, Emmett RL, Schiewe MH. Decadal Scale Climate Pattern and Salmon Survival: Indicators, Interactions and Implications. Estuarine and Ocean Survival of Northeastern Pacific Salmon [Internet]. 1996 . Available from: sites/default/files/papers/anderson/newport.pdf
Anderson JJ. Decline and Recovery of Snake River Salmon. [Internet]. 1995 . Available from: sites/default/files/papers/snake.recovery.pdf
Goodwin RA, Anderson JJ, Nestler JM, Liong S-Y, Phoon K-K, Babovic V. Decoding 3-D movement patterns of fish in response to hydrodynamics and water quality for forecast simulation. Hydroinformatics [Internet]. 2004 ;1:254-261. Available from: http://dx.doi.org/10.1142/9789812702838_0031
Norris JG, Knudsen EE. Defining equivalent exploitation rate reduction policies for endangered salmon stocks. In: Sustainable Fisheries Management: Pacific Salmon. Sustainable Fisheries Management: Pacific Salmon. New York: CRC Press LLC; 2000. pp. 451-466.
Buchanan RA, Skalski J. Detection Efficiencies at Rock Island, Rocky Reach, and Tumwater Dam Adult Ladders, 2021. Technical report to PUD No. 1 of Chelan County; 2021.
Lowther AB. Development, expansion, and evaluation of release-recapture survival models for Snake River juvenile salmonids, with new algorithms allowing time-dependent individual covariates. Quantitative Ecology and Resource Management. 2002 ;Ph.D.
VanHolmes C, Gosselin JL. Development of a Mean Annual Temperature Value for the Continued Calculation of the Pacific Northwest Climate Index. Seattle: Columbia Basin Research, University of Washington; 2020. Available from: sites/default/files/papers/Olga_Surrogate_DFA_FINAL.pdf
Buchanan RA, Skalski J, McMichael GA. Differentiating mortality from delayed migration in subyearling fall Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic SciencesCanadian Journal of Fisheries and Aquatic Sciences [Internet]. 2009 ;66(12):2243 - 2255. Available from: https://doi.org/10.1139/F09-154
Salinger DH, Rockafellar RT. Dynamic splitting: An algorithm for deterministic and stochastic multiperiod optimization. In: Higle JL, Römisch W Stochastic Programming E-Print Series. Stochastic Programming E-Print Series. Humboldt-Universit?t zu Berlin, Institut für Mathematik; 2003. Available from: http://nbn-resolving.de/urn:nbn:de:kobv:11-10058960
Hamel OS. The Dynamics and Effects of Bacterial Kidney Disease in Snake River Spring Chinook Salmon (Oncorhynchus tshawytscha). [Internet]. 2001 . Available from: sites/default/files/papers/Dissertation.pdf
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Satterthwaite WH. Ecological thresholds in forecast performance for key United States West Coast Chinook salmon stocks Gosselin JL. ICES Journal of Marine Science. 2019 ;77:1503-1515.
Ham KD, Anderson JJ, Vucelick JA. Effect of Multiple Turbine Passage on Juvenile Snake River Salmonid Survival. [Internet]. 2005 . Available from: http://www.pnl.gov/main/publications/external/technical_reports/PNNL-15450.pdf
Beer WN, Anderson JJ. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River chinook. Canadian Journal of Fisheries and Aquatic Sciences [Internet]. 2001 ;58:943-949. Available from: http://dx.doi.org/10.1139/f01-049
Beer WN, Anderson JJ. Effect of spill on adult salmon passage delay at Columbia River and Snake River dams. [Internet]. 2012 . Available from: sites/default/files/papers/Spill.and.Passage.whitepaper.2012.pdf
Perry R, Skalski JR. Effects of Array Configuration on Statistical Independence of Replicated Telemetry Arrays used in Smolt Survival Studies. Design and Analysis of Salmonid Tagging Studies in the Columbia Basin [Internet]. 2008 ;XXIII. Available from: sites/default/files/papers/Skalski/D&A Volume 23 (Independence of Replicated Arrays).pdf
Enders EC, Gessel MH, Anderson JJ, Williams JG. Effects of Decelerating and Accelerating Flows on Juvenile Salmonid Behavior. Transactions of the American Fisheries Society [Internet]. 2012 ;141(2):357-364. Available from: http://dx.doi.org/10.1080/00028487.2012.664604
Anderson JJ, Hinrichsen RA, VanHolmes C. Effects of Flow Augmentation on Snake River Fall Chinook. [Internet]. 2000 . Available from: sites/default/files/papers/anderson/flowaug_fch.pdf
Skalski J, Seaburg AG, Buchanan RA. The effects of high detection probabilities on model selection in paired release-recapture studies in the era of electronic tagging studies. [Internet]. 2013 ;1(1):12. Available from: https://doi.org/10.1186/2050-3385-1-12
Hinrichsen RA, Anderson JJ, Matthews GM, Ebbesmeyer CC. Effects of the ocean and river environments on the survival of Snake River stream-type chinook salmon. In: Marmorek DR, Peters CN, Parnell I Plan for Analyzing and Testing Hypotheses (PATH): Retrospective and prospective analyses of spring/summer chinook reviewed in fiscal year 1997. Plan for Analyzing and Testing Hypotheses (PATH): Retrospective and prospective analyses of spring/summer chinook reviewed in fiscal year 1997. Vancouver, B.C.: ESSA Technologies Ltd; 1997. Available from: sites/default/files/papers/effectsofocean.pdf
Skalski JR, Mathur D, Heisey PG. Effects of Turbine Operating Efficiency on Smolt Passage Survival. North American Journal of Fisheries Management [Internet]. 2002 ;22:1193-1200. Available from: http://dx.doi.org/10.1577/1548-8675(2002)022<1193:EOTOEO>2.0.CO;2
Salinger DH, Anderson JJ. Effects of Water Temperature and Flow on Adult Salmon Migration Swim Speed and Delay. Transactions of the American Fisheries Society [Internet]. 2006 ;135:188-199. Available from: http://dx.doi.org/10.1577/T04-181.1
Whitlock SL, Quist MC, Dux AM. Effects of Water-Level Management and Hatchery Supplementation on Kokanee Recruitment in Lake Pend Oreille, Idaho. Northwest Science [Internet]. 2018 ;92(2):136 - 148. Available from: http://www.bioone.org/doi/10.3955/046.092.0206
Duarte A, Whitlock SL, Peterson JT. Encyclopedia of EcologySpecies Distribution Modeling. Elsevier; 2019 pp. 189 - 198. Available from: https://linkinghub.elsevier.com/retrieve/pii/B978012409548910572X
Buchanan RA, , Mackey G, Snow C, Murdoch AR. Estimating Cohort Survival through Tributaries for Salmonid Populations with Variable Ages at Migration. North American Journal of Fisheries ManagementNorth American Journal of Fisheries Management [Internet]. 2015 ;35(5):958 - 973. Available from: https://doi.org/10.1080/02755947.2015.1064837
Stover A. Estimating Pacific Northwest salmon escapement: A methods review based on statistical first principles. Quantitative Ecology and Resource Management. 2009 ;M.S.
Buchanan RA, Skalski JR, Smith SG. Estimating the Effects of Smolt Transportation from Different Vantage Points and Management Perspectives. North American Journal of Fisheries Management [Internet]. 2006 ;26:460-472. Available from: http://dx.doi.org/10.1577/M05-080.1
Miller TJ. Estimation of catch parameters from a fishery observer program with multiple objectives. Quantitative Ecology and Resource Management. 2005 ;Ph.D.
Ryding KE. Estimation of demographic parameters used in assessing wildlife population trends. Quantitative Ecology and Resource Management. 2002 ;Ph.D.